It's unfortunate that it needs to be said, but yes, churches need to obey shutdown orders issued by the authorities to protect public health. The pastors and churches that are refusing these orders are not advancing the Kingdom of God, but in fact are bringing dishonor and shame to the name of Jesus Christ.
Romans 12:1-7:1 Let every person be subject to the governing authorities. For there is no authority except from God, and those that exist have been instituted by God. 2 Therefore whoever resists the authorities resists what God has appointed, and those who resist will incur judgment. 3 For rulers are not a terror to good conduct, but to bad. Would you have no fear of the one who is in authority? Then do what is good, and you will receive his approval, 4 for he is God's servant for your good. But if you do wrong, be afraid, for he does not bear the sword in vain. For he is the servant of God, an avenger who carries out God's wrath on the wrongdoer. 5 Therefore one must be in subjection, not only to avoid God's wrath but also for the sake of conscience. 6 For because of this you also pay taxes, for the authorities are ministers of God, attending to this very thing. 7 Pay to all what is owed to them: taxes to whom taxes are owed, revenue to whom revenue is owed, respect to whom respect is owed, honor to whom honor is owed.
It's conceivable that a shutdown order could in some hypothetical situation be cover for government oppression of the church, but that's definitely not the case right now.
Instead of fomenting conflict with the government, churches should be praying for our leaders, medical professionals, and infrastructure workers. Christians should also be doing whatever we can to relieve suffering, provide for those in need, and share the Gospel while obeying the health directives of our government.